ライフサイエンスコーパス: consensus sequence for

1 predicted Arabidopsis promoter sequences and consensus sequences for 105 previously characterized tra

2 PCP consensus sequences for 27 species were prepared from 92

3 Consensus sequences for 5' and 3' splice sites and branc

4 nactive X chromosome) showed footprints at a consensus sequence for a CCAAT box, two weak Sp1 sites,

5 Generation of a consensus sequence for a contig is based on an alignment

6 ed expression of the Ly-6E.1 gene and that a consensus sequence for a gamma-IFN-responsive element lo

7 nontoxic ingredients of the Celiac diet.) No consensus sequence for a high-affinity substrate of tTGa

8 holipase C-gamma1 (PLC-gamma1) that fits the consensus sequence for a mitogen-activated protein kinas

9 The amino acid consensus sequence for a molybdenum cofactor binding sit

10 This PDE contains the consensus sequence for a PDE catalytic domain, but share

11 with the intraperoxisomal localization, the consensus sequence for a peroxisomal-targeting signal 1

12 Intriguingly, this region harbors a consensus sequence for a phosphate-binding loop which is

13 The IR region contains a consensus sequence for a protein (Pur), which binds pref

14 ast eight nucleotides of the 81 bases form a consensus sequence for a splice acceptor site.

15 The mutation destroys the only consensus sequence for a splicing branch point in intron

16 en cysteine residues, eight of which fit the consensus sequence for a Zn(2+)-binding RING domain.

17 ntical to those from honey bee tissues and a consensus sequence for A. mellifera.

18 f a TATA-less housekeeping gene promoter and consensus sequences for a number of potential DNA-bindin

19 We examined the virus genomic consensus sequences for a total of 37 full-length viral

20 e divergence distributions, phylogenies, and consensus sequences for Alu elements in primates includi

21 the recent identification of an RNA binding consensus sequence for AMV and ilarvirus coat proteins,

22 he primate germline by deriving a primordial consensus sequence for an Alu repetitive element which i

23 s had mutations within a domain containing a consensus sequence for an SH3-binding protein.

24 The process for deriving PCP-consensus sequences for any group of aligned similar seq

25 er sequence consistent with an SP-1 site and consensus sequences for AP-1 and AP-2 enhancer elements,

26 A consensus sequence for Arc binding identifies several ad

27 ection method (SELEX) that revealed an 18-bp consensus sequence for Atf1-Pcr1 binding, 5'-GNVTATGACGT

28 We determined a general phosphorylation consensus sequence for ATM and identified putative in vi

29 ino acid cassette (A1) containing the Walker consensus sequence for ATP binding is replaced by a 24 a

30 members of a protein family that contains a consensus sequence for ATP binding, and purified PA700 e

31 As seemed to be replicated and 80% contained consensus sequences for autonomous replication origins t

32 articularly, this mutation is located in the consensus sequence for beta-adrenergic-activated protein

33 oter unveiled the presence of seven putative consensus sequences for beta-catenin/TCF4 binding, two o

34 Overlap of this motif with the consensus sequence for binding of Ca2+ channel beta subu

35 y related to the cAMP response element (CRE) consensus sequence for binding of cAMP-responsive transc

36 of CAMTA1-mutant mice, and elucidation of a consensus sequence for binding of CAMTA proteins to DNA

37 tein of the C terminus of SERCA1 indicated a consensus sequence for binding of XpYGSS; this is identi

38 The ybaW gene, which has a putative consensus sequence for binding the fatty acid degradatio

39 The latter two, which possess the consensus sequence for binding to PDZ domains (T/S-X-V-o

40 acid residues and thus matched very well the consensus sequence for binding to SH2 domains of src fam

41 idues (underlined) similar to the C-terminal consensus sequence for binding to syntrophin PDZ domains

42 s in the pro-domains of the PC family, and a consensus sequence for binding to the catalytic domain i

43 The woodchuck TNF gene promoter contains consensus sequences for binding of AP-1, AP-2, C/EBPbeta

44 ith sequence alignments allowed deduction of consensus sequences for binding of both proteins.

45 ns also possess similar, cysteine-containing consensus sequences for binding PDZ domains, this disulf

46 nking revealed the presence of multiple near consensus sequences for binding potential transcriptiona

47 ifs essential for initiation of replication: consensus sequences for binding the bacterial DnaA prote

48 Consensus sequences for binding these three transcriptio

49 an overlap of 158 amino acids, and contained consensus sequences for binding zinc, stabilizing the bi

50 Consensus sequences for both H1 histone-specific promote

51 rption ionization mass spectrometry revealed consensus sequences for both SH2 domains.

52 Furthermore, the WXXW motif is known to be a consensus sequence for C-mannosylation.

53 Two consensus sequences for c-myc in the 5' flanking region

54 ic peptides containing the His-Ala-Val (HAV) consensus sequence for cadherin dimerization also attenu

55 uences for heat shock proteins, and the RRAS consensus sequence for cAMP-PKA substrates.

56 nd intracellular loop (IL2) of SERT contains consensus sequences for cGMP-dependent protein kinase an

57 The results establish a consensus sequence for chemoreceptor methylation sites i

58 e 1) Thr-382 is contained within a canonical consensus sequence for CKII phosphorylation and 2) wild

59 y of TAP-B-linked molecules diverge from the consensus sequence for class la molecules whereas, at th

60 This sequence conforms to the consensus sequence for cleavage by members of the furin

61 The Deformed binding sites do not have the consensus sequence for cooperative binding with the cofa

62 fs within its C-terminal region, including a consensus sequence for cortactin SH3 domain-binding pept

63 Based on this information, we propose a consensus sequence for CovR binding to DNA.

64 The consensus sequences for CspB, CspC and CspE are U/T stre

65 Here, we used a consensus sequence for Dbl domains of Rho guanine nucleo

66 The program searches for clusters of the consensus sequence for DNA binding within a window (leng

67 h PrrA binds in vitro, to further define the consensus sequence for DNA binding.

68 ding the DSBs has led to the derivation of a consensus sequence for DSB formation.

69 t is distinct from the previously identified consensus sequence for E. coli and S. enterica.

70 The consensus sequence for each conserved region is as follo

71 ere sequenced and used to derive DNA-binding consensus sequence for each member.

72 Each laboratory generated a consensus sequence for each sample and completed a quest

73 -site-selection experiments, we identify the consensus sequence for each subsite.

74 types, except for B', in comparison with the consensus sequence for each subtype.

75 equences are then used to create an accurate consensus sequence for each template, correcting for rec

76 A consensus sequence for each type of motif was determined

77 The consensus sequences for each N-linked site were mutated

78 quences were clustered and assembled to form consensus sequences for each organism, and these assembl

79 otal coding sequence DNA), distribution, and consensus sequences for each species present in IDB.

80 as not predicted by the previously developed consensus sequence for EBNA1's binding DNA.

81 POBEC3F and APOBEC3G have a different target consensus sequence for editing, and importantly, APOBEC3

82 The consensus sequence for efficient bypass of tetrahydrofur

83 an intrinsic RNase activity and a potential consensus sequence for endonucleolytic cleavage identifi

84 e Phe/Gly repeat domain which display common consensus sequences for ERK and p38 substrates.

85 Three of the sites have the consensus sequence for ERK1 phosphorylation, and additio

86 A motif search algorithm was used to derive consensus sequences for ESEs recognized by these SR prot

87 ormatic approaches, we have identified three consensus sequences for forkhead transcription factor bi

88 This region is highly GC-rich containing the consensus sequence for four Sp1 elements (GGGCGG) and th

89 transcription start site, and which contain consensus sequences for GATA and interferon regulatory f

90 tified here as Thr231 and Ser235, are within consensus sequences for glycogen synthase kinase 3 (GSK-

91 ffected by tunicamycin or elimination of the consensus sequence for glycosylation at Asn70.

92 monstrated that Thr143 serves as part of the consensus sequence for glycosylation at N141, and it is

93 This substitution alters the predicted consensus sequence for glycosylation, Asn-X-Ser, adjacen

94 osaccharides from SP-A by mutagenesis of the consensus sequences for glycosylation had no effect on b

95 egions deviate significantly from recognized consensus sequences for Group I introns.

96 phosphorylation at Ser204, fitting the known consensus sequence for GSK3 substrates.

97 Thus, despite the lack of a -35 consensus sequence for H. pylori promoters, the -35 regi

98 hin the collagen tail of AChE, there are two consensus sequences for heparin binding of the form BBXB

99 sidues that exactly or nearly match proposed consensus sequences for heparin-binding domains (HBDs);

100 Identification of the consensus sequences for HMGA2 represents an important st

101 nt (SELEX) procedure, we have identified two consensus sequences for HMGA2, 5'-ATATTCGCGAWWATT-3' and

102 We also found a weak consensus sequence for host DNA at integration sites, an

103 A confident consensus sequence for Hsmar1, the first mariner transpo

104 domain of Notch or its homologs contain the consensus sequence for hydroxylation.

105 atalytic site of PDE, near the NKXD motif, a consensus sequence for interaction with the guanine ring

106 Here, we report a novel consensus sequence for interaction with the PDZ-1 and PD

107 GluR1 possesses a C-terminal consensus sequence for interactions with PDZ domains of

108 ge site is next to four arginine residues, a consensus sequence for intracellular subtilysin type pro

109 to A transition mutation is within a splice consensus sequence for intron 1.

110 3' boundary, in agreement with the proposed consensus sequence for intron spliced donor and acceptan

111 ins a highly conserved B30.2 motif, multiple consensus sequences for kinases, and post-Golgi sorting

112 This docking site conforms to the consensus sequence for known D-sites in other MKKs and c

113 er region indicated the presence of putative consensus sequences for known hypoxia-responsive regulat

114 tified ERSR cis-element, nor do they contain consensus sequences for known transcription factors.

115 , and possibly, a third region containing no consensus sequences for known transcription factors.

116 DR499Wp contains an NES that conforms to the consensus sequence for leucine-rich NESs.

117 gnal peptide terminated by LLISC, a probable consensus sequence for lipoprotein modification, and a m

118 gnal peptide terminated by LFVAC, a probable consensus sequence for lipoprotein modification, and a m

119 This region of the gene also contains consensus sequences for liver-enriched transcription fac

120 the microarray analysis revealed a putative consensus sequence for M. tuberculosis SigM of -35 GGAAC

121 hree Mac1-responsive elements in FRE7, a new consensus sequence for Mac1 binding can be established a

122 hionine, AAGATGG, conforms well to the Kozak consensus sequence for mammalian protein biosynthesis an

123 resented for all 17 exons and conform to the consensus sequences for mammalian splice sites.

124 ors, identified 2 decades ago, established a consensus sequence for methylation by methyltransferase

125 he site surrounding serine 721 is an optimum consensus sequence for mitogen-activated family of prote

126 -phosphate receptors engineered to contain a consensus sequence for modification by this enzyme.

127 xclusively in the sequence 5'-NAT-3', but no consensus sequence for modified sites has been found.

128 FIP-1 has two consensus sequences for myristoylation which would be ex

129 An additional consensus sequence for N-glycosylation at Asn 662 is lik

130 o that of peptides, and the requirement of a consensus sequence for N-glycosylation further limits th

131 mmunoglobulin (Ig)-like domains, each with a consensus sequence for N-glycosylation.

132 The latter defines an Asn-Xaa-Thr consensus sequence for N-glycosylation.

133 S, and A125T were introduced to preserve the consensus sequence for N-linked glycosylation found in h

134 ids (PALLREAENFTLFIKNS) that includes an NFT consensus sequence for N-linked glycosylation.

135 Human CD69 contains only a single consensus sequence for N-linked oligosaccharide addition

136 laced by those of src, which also contains a consensus sequence for N-myristoylation, or by those of

137 CaBP1 and CaBP2 contain a consensus sequence for N-terminal myristoylation, simila

138 ineering of the p19Arf N terminus to provide consensus sequences for N-acetylation limited Arf ubiqui

139 tionally significant protein motifs revealed consensus sequences for N-glycosylation, protein kinase

140 r domain of these receptors contains several consensus sequences for N-linked glycosylation that may

141 In addition, these data suggest a consensus sequence for NESs of the Rev/Rex class.

142 We defined consensus sequences for Neurogenin and NeuroD binding an

143 the bcl-x gene promoter contains a putative consensus sequence for NF-kB/CS4 responsive activation.

144 e in Bacillus megaterium, which reflects the consensus sequence for non-alkaliphilic Bacillus.

145 amer binding motif and also conformed to the consensus sequence for nuclear matrix attachment regions

146 sites within the ICR are very similar to the consensus sequence for nuclear receptor extended half si

147 that NLVCF is a novel gene that contains two consensus sequences for nuclear localization signals.

148 Sequence analysis revealed the presence of consensus sequences for numerous transactivating factors

149 We recently proposed a broadened consensus sequence for O-fucose, C(2)X(3-5)(S/T)C(3) (wh

150 Although the current putative consensus sequence for O-GlcNAcylation predicts 18 O-Glc

151 n this finding, we propose a revision of the consensus sequence for O-glucosylation to allow alanine

152 Cysteines are present in each domain and consensus sequences for O-linked glycosaminoglycans are

153 ences of these selective substrates with the consensus sequence for optimal substrates for t-PA, deri

154 Nevertheless, a consensus sequence for origins has yet to be identified

155 Our data indicate that the generally held consensus sequences for p34(cdc2) represent a significan

156 ynamics simulations on DNA segments with the consensus sequence for p53-specific binding, half site D

157 protein overlaps a PuPuPuC(A/T)(T/A)GPyPyPy consensus sequence for p53.

158 rticular importance because of the lack of a consensus sequence for palmitoylation.

159 We used all 10 sites to refine the consensus sequence for parS.

160 among themselves and with previously defined consensus sequences for Pax-5 and Pax-2.

161 A consensus sequence for Pbx1-HoxA10 DNA binding has been

162 The mutation of the consensus sequences for PC cleavage in the lefty protein

163 ger group of peptides containing a different consensus sequence for PCNA binding was discovered.

164 an extended "PIF" sequence C-terminal to the consensus sequence for PDK1 phosphorylation.

165 esis contained sequences which resembled the consensus sequence for PhoB binding.

166 61 and the surrounding amino acids are in a consensus sequence for phosphorylation by casein kinase

167 This threonine lies within a consensus sequence for phosphorylation by casein kinase

168 Phosphorylation of Ser319 forms a consensus sequence for phosphorylation by CK1, allowing

169 Tyr-161 shares similarity to the consensus sequence for phosphorylation by the nonrecepto

170 88 of APS is contained in a protein kinase B consensus sequence for phosphorylation conserved in APS

171 Both of these proteins, which have optimal consensus sequences for phosphorylation by Fes, were tig

172 sites do not correspond to the known optimum consensus sequences for phosphorylation by MAPK (PX(S/T)

173 The large number of consensus sequences for phosphorylation by PKA has natur

174 Each species' amino acid sequence contains consensus sequences for phosphorylation by PKC (KVT(72)V

175 s of amino acid residues thought to serve as consensus sequences for phosphorylation by serine/threon

176 The StAR protein contains two consensus sequences for phosphorylation catalyzed by pro

177 The previously derived consensus sequence for phosphotyrosine recognition by th

178 ression of COX-2 by PMA and the existence of consensus sequences for PKC phosphorylation, it appears

179 lo-alpha in which Ser-1072 (the only optimal consensus sequence for PKG phosphorylation) was replaced

180 quences for PLK2, -3, and -4 and an expanded consensus sequence for PLK1, which we use to design an o

181 These findings suggest that consensus sequences for posttranslational modifications

182 f the SF3b155 sites defines an (R/K)nXRW(DE) consensus sequence for predicting U2AF65-UHM ligands fro

183 four animals, the new sequences represented consensus sequences for primate lentiviruses, whereas th

184 tion start sites showed good homology to the consensus sequences for promoter elements of sigma(F)-de

185 katA is a sequence that closely matches the consensus sequence for promoters regulated in Escherichi

186 This region contains a consensus sequence for protein kinase A, RRAS(230)F, and

187 al alterations, and ii) define an amino acid consensus sequence for protein palmitoylation.

188 cent protein (GFP)-TOP1 corresponding to the consensus sequence for protein sumoylation (PsiKXE, wher

189 he Arf GAP domain, and one of these fits the consensus sequence for PtdIns(3,4,5)P(3) binding.

190 surrounding phosphotyrosine 317 matches the consensus sequence for recognition by the phosphotyrosin

191 the T-arm of tRNA and constructed a minimal consensus sequence for RUMT recognition and catalysis.

192 lerated within the stem-loop-forming genomic consensus sequence for self-catalyzed site-specific depu

193 The consensus sequences for self-depurination of such G- and

194 FIP-2 has consensus sequences for several potential posttranslatio

195 d N-terminal polyproline regions fitting the consensus sequence for SH3 domain ligands, and a YDYV mo

196 tored the binding selectivity to the general consensus sequence for SH3 domains, the PXXP motif.

197 ion in SIV Nef was strikingly similar to the consensus sequence for SH3 ligand domains possessing the

198 ed genes in the sigH regulon with a putative consensus sequence for SigH binding that was recognized

199 nd other regulatory regions led to a revised consensus sequence for sigmaE-dependent promoters.

200 Here, we exploit a preliminary consensus sequence for sigmaR target promoters to identi

201 experiments with oligonucleotides containing consensus sequences for Sp1 and AP-1 binding identified

202 omoter contains 1-base pair (bp) overlapping consensus sequences for Sp1 and MAZ transcription factor

203 to the CH exons from another locus by using consensus sequences for splicing donor and acceptor site

204 This site is adjacent to a consensus sequence for Src-mediated tyrosine phosphoryla

205 hese two tyrosine residues are surrounded by consensus sequences for Src homology 2 (SH2) domain bind

206 , contain a proline-rich region that matches consensus sequences for Src homology 3 (SH3) ligands.

207 Most splice junctions conform to consensus sequences for such junctions.

208 uence homology of a sample tested to a group consensus sequence for that sample.

209 This site lies within the consensus sequence for the acidotrophic kinases, casein

210 eness to GnRH-2 (SURG-2), which contains the consensus sequence for the activating protein-1-binding

211 a fluorescein-labeled decoy ODN containing a consensus sequence for the AP-1 transcription factor, we

212 tinct LexA binding sites reveals an expanded consensus sequence for the B. subtilis operator: 5'-CGAA

213 functional beta-lactamase mutants revealed a consensus sequence for the binding of BLIP.

214 The phosphorylation generated a consensus sequence for the binding of the SH2 domain of

215 Altering the enhancer pyrimidine tract to a consensus sequence for the binding of U2AF eliminated en

216 sing an oligonucleotide corresponding to the consensus sequence for the biotin-binding motif, two unl

217 We have assembled the predicted mRNA consensus sequence for the chicken UBE3A gene using publ

218 E, 5'-TGACGTCA-3', has been described as the consensus sequence for the cis-element that directs cAMP

219 cleaved within the gamma2 chain matches the consensus sequence for the cleavage of type I, II, and I

220 A consensus sequence for the coiled-coil copine-binding si

221 ted species allowed us to deduce an expanded consensus sequence for the compositionally unusual promo

222 pe 1 repeats (TSR), seven of which contain a consensus sequence for the direct addition of fucose to

223 ly transcribed flagellar promoters possess a consensus sequence for the DNA-binding protein integrati

224 of homology to each other as well as to the consensus sequence for the Escherichia coli Fur protein.

225 To assay the genomic DNA, we established a consensus sequence for the first 12 kb of the COL1A1 gen

226 The consensus sequence for the first family, HeliBat1, displ

227 ulting structural changes alter the adjacent consensus sequence for the guanine ring binding of GDP/G

228 the major start site P1 is dependent upon a consensus sequence for the housekeeping sigma factor Sig

229 transcribed from promoters containing a new consensus sequence for the human initiator (Inr) core pr

230 r purine and Y stands for pyrimidine, as the consensus sequence for the KCS element, both for basal a

231 395 and threonine 1179) contained a perfect consensus sequence for the mitogen-activated protein kin

232 A consensus sequence for the mycobacterial OxyR recognitio

233 The consensus sequence for the NAD(P)H binding site [(V/I)(A

234 yotic and eukaryotic P5CRs is similar to the consensus sequence for the NAD(P)H-binding site of other

235 b and Ec core sequences are identical to the consensus sequence for the nuclear hormone receptor supe

236 id sequence shows regions of homology to the consensus sequence for the peptidyl carrier protein (PCP

237 he purified protein and the other based on a consensus sequence for the phosphorylation site of P-typ

238 The lack of a defined consensus sequence for the ppGalNAcTs makes the predicti

239 h residues 17 to 21 (L-A-A-C-S) matching the consensus sequence for the prolipoprotein cleavage site

240 The Alu sequence was less similar to the consensus sequence for the PV or Sb2 subfamilies, subfam

241 A consensus sequence for the second ancient mariner identi

242 The consensus sequence for the selected thioaptamers showed

243 promoters have excellent matches to the -10 consensus sequence for the sigma 70 subunit of Escherich

244 contained a GC-rich region consistent with a consensus sequence for the SP1 family, that was sufficie

245 seven conserved tyrosines, a phosphorylation consensus sequence for the Src family of tyrosine kinase

246 alysis predicts a COOH-terminal (E/Q)(S/T)XV consensus sequence for the strongest binding to the firs

247 vivo binding sites have a weak match to the consensus sequence for the transcription factor being an

248 A consensus sequence for the two direct repeats bound by H

249 ine phosphorylation are also present, as are consensus sequences for the binding of SH2 and PDZ domai

250 The human iNOS promoter contains consensus sequences for the binding of transcription fac

251 of a TATA-box, a high GC region, and several consensus sequences for the binding of transcription fac

252 The consensus sequences for the DNA polymerase gamma exonucl

253 ChIP-chip studies have provided conflicting consensus sequences for the FOXP2-binding site.

254 The consensus sequences for the high affinity UhpA-binding s

255 BP-1 gene structure revealed three potential consensus sequences for the hypoxia response element (HR

256 bling EST sequences to produce high-fidelity consensus sequences for the represented genes (F.L. et a

257 and antagonists on Muc-1 expression, because consensus sequences for the response elements of these s

258 All the sites contained consensus sequences for the serine/threonine-proline-dir

259 genome were sufficient to provide functional consensus sequences for the THAP domains, they do not sp

260 .1% identity of nt sequences and contain the consensus sequences for the transcription factors AP-2 a

261 Consensus sequences for the two study groups were identi

262 In the present study we derived a consensus sequence for this entire ORF (ORF2) as well as

263 ed and oriented using known genes, BAC ends, consensus sequences for transcript assemblies, and compa

264 nt DNA-protein complex that was abolished by consensus sequence for transcription factor ZNF143/76 or

265 ations identified were in close proximity to consensus sequences for transcription control elements w

266 moieties, accounting, in part, for the broad consensus sequence for TrmA substrates.

267 site of human PPT-I promoter and identified consensus sequences for two cAMP response elements (CRE)

268 henylalanineCOOH, that closely resembles the consensus sequence for type-1 peroxisomal targeting sign

269 Both Ser reside in consensus sequences for type II calmodulin-dependent pro

270 nine replacement of three tyrosines within a consensus sequence for tyrosine sulfation abolished bind

271 The phosphorylation consensus sequence for Ypk1 was similar to that for PKBa

272 recognize several DNA substrates without the consensus sequence for YY1 in vitro, and DNA binding is

273 Database search revealed presence of a consensus sequence for zinc finger protein gut-enriched