ライフサイエンスコーパス: conserved synteny

1 markers and allowed genome-wide analysis of conserved synteny.

2 ther human osteopetrosis maps to a region of conserved synteny.

3 that the Fugu C9/DOC-2 locus is a region of conserved synteny.

4 ty reference to a new genome on the basis of conserved synteny.

5 chromosome 1q21 within an 11.7 Mb segment of conserved synteny.

6 and human chromosome 11 in a known region of conserved synteny.

7 use chromosome 9, and the human regions with conserved synteny (1q21-q25 and 11q22-qter) are believed

8 Because of conserved synteny, a high-density map of the A. tauschii

9 n the maintenance of such a large section of conserved synteny across the vertebrate lineage.

10 Moreover, an analysis of conserved synteny among rats, mice, and humans suggested

11 Although some conserved syntenies are quite large, there were changes

12 ce alignments, 344 large (>100-kb) blocks of conserved synteny are evident, but these are further fra

13 Measures of conserved synteny are important for estimating the relat

14 We further show that conserved syntenies between ALG2 and amniote chromosomes

15 Putative conserved syntenies between catfish and zebrafish, medak

16 accepted hypothesis is primarily based upon conserved syntenies between in-group taxa (birds and mam

17 Conserved syntenies between seabass LG2 and five other t

18 Because of the conserved syntenies between the dog and human, this appr

19 Gene maps showed that blocks of conserved syntenies between zebrafish and humans were la

20 Conserved synteny between cattle, human, and mouse was f

21 The identification of regions of conserved synteny between Fugu and humans would greatly

22 se chromosome, and localizes the junction of conserved synteny between HSA21 and HSA22 on MMU10.

23 E is located within a 10- to 15-cM region of conserved synteny between human chromosome 7 and mouse c

24 s map assignment further defines a region of conserved synteny between human Xq22-q25 and the mouse p

25 h men1, fgf3 and cycd1 define two regions of conserved synteny between linkage group 7 and 11q13.

26 s the new proximal boundary of the region of conserved synteny between MMU10 and HSA21 and predicts t

27 cations extend and further define regions of conserved synteny between mouse and human genomes and id

28 One EST mapped to a region of conserved synteny between mouse chromosome 2 and human c

29 , allowing ready visualization of regions of conserved synteny between species.

30 duplication of these molecules or to analyze conserved synteny between teleost and mammalian CC chemo

31 Although no novel regions of conserved synteny between the cattle and the human genom

32 e radiation hybrid group 14-a, which extends conserved synteny between the dog, human chromosome 2q a

33 chicken sequences suggested a high degree of conserved synteny between the two avian genomes.

34 that the NRAP gene is located in regions of conserved synteny between the two species.

35 that the KHSRP gene is located in regions of conserved synteny between the two species.

36 enome draft sequence showed a high degree of conserved synteny between the zebra finch and the chicke

37 genomes were used to identify the regions of conserved synteny between these genomes.

38 ish Na,K-ATPase genes localize to regions of conserved synteny between zebrafish and humans.

39 Our data show conserved synteny between zebrafish and mammalian SCL an

40 erved syntenies given the observed number of conserved syntenies by taking into account the dependenc

41 id sequence, comparative gene structure, and conserved synteny, chicken DNase II appears to represent

42 6 homology matches, thus enabling use of the conserved synteny (correspondence between chromosome blo

43 cation timing was observed across regions of conserved synteny, despite considerable species variatio

44 Comparative genomic analysis demonstrated conserved syntenies for all FA genes.

45 e did not hinder efforts to map and identify conserved syntenies from a small sample of 24 protein-co

46 us methods for estimating the true number of conserved syntenies given the observed number of conserv

47 human chromosome 16p13.3 and form part of a conserved synteny group with mouse chromosome 17.

48 information for examining gene order in this conserved synteny group.

49 percent of genes and ESTs analyzed belong to conserved synteny groups (two or more genes linked in bo

50 the positions of orthologous markers and the conserved synteny groups between human and cattle and hu

51 A total of 51 conserved synteny groups that include 173 conserved segm

52 that permit comparison of gene order within conserved synteny has not advanced beyond the mouse map

53 ethod, we show that approximately 65% of the conserved syntenies have already been identified for hum

54 The conserved syntenies identified here between the catfish

55 cally involves identification of segments of conserved synteny in diverse genomes.

56 al difference analysis to define a region of conserved synteny in hamsters with both the mouse and hu

57 d we compared this region with the region of conserved synteny in mouse.

58 There is a high degree of conserved synteny in the genomic regions encoding the co

59 Map comparisons revealed 139 new conserved syntenies, in which two or more genes are on t

60 nome sequences in order to detect regions of conserved synteny, in which multiple proteins from one o

61 mosome survey sequencing, and integration of conserved synteny information of three sequenced model g

62 Zebrafish-human comparisons demonstrate conserved synteny involving nrf2 and hox genes, indicati

63 ted to Down syndrome depends on how well the conserved synteny is maintained.

64 ap with Danio, revealing numerous regions of conserved synteny, many of which are shared across criti

65 On the basis of conserved synteny, mouse deafness mutations shaker-2 (sh

66 assigned to an identified canine chromosome, conserved synteny of this linkage group with human 12p13

67 The conserved synteny of this region of CFA9 and distal huma

68 There thus exists conserved synteny of unrelated genes between mammals and

69 Mb of published sequence from the region of conserved synteny on human chromosome 5q31-q33 identifie

70 hromosome 4p12 and at a recognized region of conserved synteny on mouse chromosome 5.

71 Overlay of the mouse conserved syntenies onto HSA11 revealed that segmental b

72 r example, underpinning the investigation of conserved synteny patterns.

73 omes, together with the inferred patterns of conserved synteny, provide additional insights into vert

74 Mutation rates, conserved synteny, repeat content, and phylogeny can be

75 nd may be associated with the high degree of conserved synteny, suggesting that these are features of

76 Although there are large blocks of conserved syntenies, the gene order between human and ze

77 On the basis of sequence homology and conserved synteny, the rjs gene is the single mouse homo

78 Conserved synteny-the tendency of neighboring genes to r

79 sides on a region of mouse chromosome 6 with conserved synteny to a region of human chromosome 7q tha

80 arrangements: 53% of equine chromosomes show conserved synteny to a single human chromosome.

81 rass (Lolium perenne) genome on the basis of conserved synteny to barley (Hordeum vulgare) and the mo

82 pping identified a genomic region exhibiting conserved synteny to human chromosome 2, which included

83 tion on feline chromosome A1q in a region of conserved synteny to human chromosome 5q15.

84 The H3 complex spans a region that shows conserved synteny to human chromosomes 15q, 2q, and 20p.

85 mosome 10q21-22 harbors USH1F in a region of conserved synteny to mouse chromosome 10.

86 human chromosomes 6p21.2-p21.3 (a region of conserved synteny to mouse Chromosome 17) and 7q22-q31.1

87 e Chromosome 17) and 7q22-q31.1 (a region of conserved synteny to mouse Chromosome 5).

88 ne chromosome 15q14-q15.1 within a region of conserved synteny to the chromosomal locations of human

89 e, was mapped to chromosome 9 at a region of conserved synteny to which genes for cathelicidins have

90 te chromosomes are identified as overlapping conserved syntenies when all available chicken (N = 3120

91 genomes throughout the bird taxa show a much-conserved synteny, whereas at the single-base resolution

92 omic segment on chromosome Xp11.22 which has conserved synteny with a 705 kb genomic segment of human

93 localized to chromosome 5q23.1, a region of conserved synteny with a portion of mouse chromosome 17

94 nking region of the nitr gene complex shares conserved synteny with a region of mouse chromosome 7, w

95 The hemichordate genomes exhibit extensive conserved synteny with amphioxus and other bilaterians,

96 enes mapped within or adjacent to regions of conserved synteny with corresponding human chromosomes.

97 The SWS1 gene shows a conserved synteny with flanking genes.

98 single-copy gene, which maps in a region of conserved synteny with FY and produces a glycoprotein wi

99 0 kb on mouse chromosome 11, which maintains conserved synteny with human 17p.

100 a region of mouse chromosome 7, which shares conserved synteny with human 19q13.3-q13.4 that encodes

101 s to mouse chromosome 4, in a region showing conserved synteny with human 1p36.

102 ese genes map to chromosome 5 in a region of conserved synteny with human 4p16.3.

103 ported that zebrafish linkage group 7 shares conserved synteny with human chromosome 11q13.

104 ne localized to chromosome 8, in a region of conserved synteny with human chromosome 16.

105 rm a cluster on chromosome 17 in a region of conserved synteny with human chromosome 19.

106 region of chicken chromosome 8 that exhibits conserved synteny with human chromosome 1p.

107 regions of mouse Chromosome 10 (MMU10) show conserved synteny with human chromosome 22 (HSA22) and t

108 to linkage group 16 in a region that shares conserved synteny with human chromosome 7 containing the

109 ts of the human genome identifies regions of conserved synteny with human chromosomes (Hsa) 3, 8, 12,

110 Some regions of the genome show conserved synteny with mammalian genomes, although at th

111 We observed large blocks of conserved synteny with Medicago truncatula and estimated

112 uman chromosome 17p11.2, a region that shows conserved synteny with mouse shaker-2.

113 Following conserved synteny with other vertebrates, we also mapped

114 This human locus is in a region of conserved synteny with pig chromosome 9, to which the po

115 maps to chicken chromosome Z in a region of conserved synteny with the centromeric region of mouse c

116 The ic locus on mouse chromosome 1 shares conserved synteny with the chromosomal location of the h

117 The L. perenne S and Z loci showed conserved synteny with the equivalent loci in rye (Secal

118 19 gene maps to chromosome 8, in a region of conserved synteny with the human counterpart on chromoso

119 rganized into genomic clusters, which are in conserved synteny with the mammalian LRC.

120 t is present on scaffold 104, in a region of conserved synteny with zebrafish.

121 cus and other gene clusters has now revealed conserved synteny with zygomycete fungi, indicating that

122 ived methods to estimate the total number of conserved syntenies within the genome, counting both tho